Ok, so I can confirm after weeks of use this particular problem is gone. HOWEVER its been replaced by another problem that's just as frustrating. Now when I click on a Windows app in the dock, the window(s) will pop to the foreground then a few milliseconds later drop back into the background. If you keep clicking the dock icon it keeps doing the same thing. This happens with any app and occurs randomly. You can usually make it go away by clicking around on different windows in the foreground and trying again.